Russian Journal of Theriology. Main page    

Russian Journal of Theriology. Main page
Free access to the published articles
Information about online submission, Articles format, Instructions for authors etc
Instructions for reviewers
Subscription and prices
Contacts

Русскоязычный вариант сайта
Contribution to the species composition and taxonomic status of some Rattus inhabiting Southern Vietnam and Sundaland
Balakirev A.E., Rozhnov V.V.
P. 33-45
The sequencing of Cyt b and COI mtDNA genes was used to investigate the species composition of Rattus rats in Southern Vietnam and establish an actual correspondence between revealed mtDNA haplogroups and taxonomical species for the group in the region. Seven specific level phylogroups corresponding to Rattus tanezumi, R. norvegicus, R. nitidus, R. andamanensis, R. exulans, R. argentiventer and R. tiomanicus were discovered, with European R. rattus apparently being absent. By comparing original genetic data with other sequences representing different localities in Indochina and the Sundaland regions from GenBank, transsundaic distribution of R. tiomanicus was shown in continental Indochina well beyond the Isthmus of Kra, along with the other species, R. argentiventer, overpassing the limit. The adequacy of species attribution and taxonomic names for three Indochinese species (R. andamanensis, R. argentiventer and R. tiomanicus) is discussed based on comparisons of morphological peculiarities and genetic data set for Vietnamese samples. Corrected nomenclature for specific level haplogroups/species of Rattus in Southeast Asia is proposed.

DOI: 10.15298/rusjtheriol.11.1.03

References

  • Baker R.J. & Bradley R.D. 2006. Speciation in mammals and the genetic species concept // Journal of Mammalogy. Vol.87. P.643-662.

  • Bastos A.D., Nair D., Taylor P.J., Brettschneider H., Kirsten F., Mostert E., von Maltitz E., Lamb J.M., van Hooft P., Belmain S.R., Contrafatto G., Downs S. & Chimimba C.T. 2011. Genetic monitoring detects an overlooked cryptic species and reveals the diversity and distribution of three invasive Rattus congeners in South Africa // BMC Genetics. Vol.12. P.26.

  • Bradley R.D. & Baker R.J. 2001. A test of the genetic species concept: cytochrome b sequences and mammals // Journal of Mammalogy. Vol.82. P.960-973.

  • Chinen A.A., Suzuki H., Aplin K.P., Tsuchiya K. & Suzuki S. 2005. Preliminary genetic characterization of two lineages of black rats (Rattus rattus sensu lato) in Japan, with evidence for introgression at several localities // Genes and Genetic Systems. Vol.80. P.367-375.

  • Corbet G.B. & Hill J.E. 1992. The Mammals of the Indo-Malayan Region: A Systematic Review. Oxford: Oxford University Press. 488 p.

  • Ellerman J.R. 1949. The Families and Genera of Living Rodents. London: British Museum (Natural History). Vol.3. Pt.1. 210 p.

  • Ellerman J.R. & Morrison-Scott T.C.S. 1966. Checklist of Palaearctic and Indian Mammals, 1758 to 1946. Second edition. London: British Museum of Natural History. 810 p.

  • Hall T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT // Nuclear Acids Symposium. Ser.41. P.95-98.

  • Irwin D., Kocher T.D. & Wilson A.S. 1991. Evolution of the cytochrome b gene of mammals // Journal of Molecular Evolution. Vol.32. P.128-144.

  • Jones J.K., Jr. & Johnson D.H. 1965. Synopsis of the lagomorphs and rodents of Korea // University of Kansas Publications, Museum of Natural History. No.16. P.357-407.

  • Kocher T.D., Thomas W.K., Meyer A., Edwards S.V., Pддbo S., Villablanca F. & Wilson A. 1989. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers // Proceedings of National Academy of Sciences of USA. Vol.86. P.6196-6200.

  • Kumar S., Tamura K. & Nei M. 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment // Briefings in Bioinformatics. Vol.5. P.150-163.

  • Kuznetsov G.V. 2006. [Mammals of Vietnam]. Moskva: KMK Scientific Press Ltd. 420 p. [in Russian].

  • Lunde D.P. & Nguyen Truong Son. 2001. An Identification Guide to the Rodents of Vietnam. New York: Center for Biodiversity and Conservation, American Museum of Natural History. 80 p.

  • Marshall J. 1977. A synopsis of the Asian species of Mus // Bulletin of American Museum (Natural History). Vol.158. P.173-220.

  • Musser G.G. 1986. Sundaic Rattus: definitions of Rattus baluensis and Rattus korinchi // American Museum Novitates. No.2862. P.1-24.

  • Musser G. & Califia D. 1982. Results of the Archbold expeditions. No.106. Identities of rats from Pulau Maratua and other islands of East Borneo // American Museum Novitates. No.2726. P.1-30.

  • Musser G.G. & Carleton M.D. 1993. Family Muridae // Wilson D.E. & Reeder D.M. (eds.). Mammal Species of the World. A Taxonomic and Geographic Reference. Second edition. Washington: Smithsonian Institution Press. P.501-755.

  • Musser G.G. & Carleton M.D. 2005. Superfamily Muroidea // Wilson D.E. & Reeder D.M. (eds.). Mammals Species of the World. A Taxonomic and Geographic Reference. Third edition. Baltimore: Johns Hopkins University Press. Vol.2. P.894-1531.

  • Musser G.G. & Newcomb C. 1983. Malaysian murids and the giant rat of Sumatra // Bulletin of American Museum (Natural History). Vol.174. P.327-598.

  • Musser G.G. & Newcomb C. 1985. Definition of Indochinese Rattus losea and a new species from Vietnam // American Museum Novitates. No.2814. P.1-32.

  • Nowak R.M. 1999. Walker's Mammals of the World. Sixth edition. Baltimore and London: The Johns Hopkins University Press. Vol.2. P.837-1936.

  • Pages M., Chaval Y., Herberteau V., Waengsothorn S., Cosson J.-F., Hugot J.-P., Morand S. & Michaux J. 2010. Revisiting the taxonomy of the Rattini tribe: a phylogeny based delimitation of species boundaries // BMC Evolutionary Biology. Vol.10. P.184.

  • Pavlinov I.Ya. 2005. [Systematic of Recent Mammals]. Second edition. Moskva: Izdatel'stvo Moskovskogo Universiteta. 297 p. [in Russian].

  • Robins J.H., Hingston M., Matisoo-Smith E. & Ross H.A. 2007. Identifying Rattus species using mitochondrial DNA // Molecular Ecology Notes. Vol.7. P.717-729.

  • Robins J.H., McLenachan P.A., Phillips M.J., McComish B.J., Matisoo-Smith E. & Ross H.A. 2010. Evolutionary relationships and divergence times among the native rats of Australia // BMC Evolutionary Biology. Vol.10. P.375.

  • Ross H.A, Lento G.M., Dalebout M.L., Goode M., Ewing G., McLaren P., Rodrogo A.G., Lavery S. & Baker C.S. 2003. DNA surveillance: web-based molecular identification of whales, dolphins, and porpoises // Journal of Heredity. Vol.94. P.111-114.

  • Sambrook J., Fritsch E.F. & Maniatis T. 1989. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor: Cold Spring Harbor Lab. 256 p.

  • Savolainen V., Cowan R.S., Vogler A.P., Roderick G.K. & Lane R. 2005. Towards writing the encyclopedia of life: an introduction to DNA barcoding // Philosophical Transactions of the Royal Society of London. Series B. Biological Sciences. Vol.360. P.1805-1811.

  • Schlick N.E., Jensen-Seaman M.I., Orlebeke K., Kwitek A.E., Jacob H.J. & Lazar J. 2006. Sequence analysis of the complete mitochondrial DNA in 10 commonly used inbred rat strains // American Journal of Physiology and Cell Physiology. Vol.291. P.1183-1192.

  • Suzuki H., Tsuchiya K. & Takezaki N. 2000. A molecular phylogenetic framework for the Ryukyu endemic rodents Tokudaia osimensis and Diplothrix legata // Molecular Phylogenetic and Evolution. Vol.15. P.15-24.

  • Suzuki H., Sato J.J., Tsuchiya K., Luo J., Zhang Y.-P., Wang Y.-X. & Jiang X.-L. 2003. Molecular phylogeny of wood mice (Apodemus, Muridae) in East Asia // Biological Journal of Linnaean Society. Vol.80. P.469-481.

  • Tollenaere C., Brouat C., Duplantier J.-M., Rahalison L., Rahelinirina S., Pascal M., Mone H., Mouahid G., Leirs H. & Cosson J.-F. 2010. Phylogeography of the introduced species Rattus rattus in the western Indian Ocean, with special emphasis on the colonization history of Madagascar // Journal of Biogeography. Vol.37. P.398-410.

  • Truong T.T., Yoshimatsu K., Araki K., Lee B.H., Nakamura I., Endo R., Shimizu K., Yasuda S.P., Koma T., Taruishi M., Okumura M., Truong U.N. & Arikawa J. 2009. Molecular epidemiological and serological studies of hantavirus infection in northern Vietnam // Journal of Veterinary and Medical Sciences. Vol.71 P.1357-1363.

  • Van Peenen P.F.D. 1969. Preliminary Identification Manual for Mammals of South Vietnam. Washington: US National Museum, Smithsonian Institution. 193 p.

Download PDF