Genetic and cytogenetic variation of African root-rats Tachyoryctes splendens (Mammalia: Rodentia) from Ethiopia Lavrenchenko L.A., Mengistu S., Bulatova N.Sh., Bekele A., Potapov S.G., Nadjafova R.S., Belay G. P. 109-118 Genetic and cytogenetic variation of African root-rats Tachyoryctes splendens sensu lato from Ethiopia was assessed on 23 complete cytochrome b gene sequences (1140 bp) and chromosomal sets from eight individuals. Results of this study suggest that the real diversity of Ethiopian Tachyoryctes splendens s.l. has been underestimated due to its apparent cryptic diversification. The molecular genetic analysis reveals genetic subdivision including at least four allopatric and deeply divergent mitochondrial lineages, restricted to the Simien Mountains and the Northern, Southern and Eastern parts of the Ethiopian Plateau. Three of them possess unique karyotypes while chromosomal characteristics of the Eastern lineage remain unknown. These lineages may represent distinct species, however additional analyses of molecular, chromosomal and morphological data should be conducted to confirm our preliminary results and provide a real basis for species delimitation within Ethiopian Tachyoryctes splendens s.l.
DOI: 10.15298/rusjtheriol.13.2.07References- Afework Bekele. 1986. The status of some mole-rats of the genus Tachyoryctes (Rodentia: Rhizomyidae) based upon craniometric studies // Revue de Zoologie Africaine. T.99. P.411-417.
- Aniskin V.M., Lavrenchenko L.A., Varshavskii A.A. & Milishnikov A.N. 1997. Karyotypes and chromosomal differentiation of two Tachyoryctes species (Rodentia, Tachyoryctinae) from Ethiopia // Russian Journal of Genetics. Vol.33. P.1079-1084.
- Avise J.C. 2009. Phylogeography: retrospect and prospect // Journal of Biogeography. Vol.36. P.3-15.
- Baker R.J. & Bradley R.D. 2006. Speciation in mammals and the genetic species concept // Journal of Mammalogy. Vol.87. No.4. P.643-662.
- Baskevich M.I., Orlov V.N., Afework Bekele & Assefa Mebrate. 1993. Notes on the karyotype of Tachyoryctes splendens (Rüppel 1836) (Rodentia, Rhizomyidae) from Ethiopia // Tropical Zoology. Vol.6. P.81-88.
- Beolchini F. & Corti M. 2004. The taxonomy of the genus Tachyoryctes: a geometric morphometric approach // Italian Journal of Zoology. Vol.71. P.35-43.
- Bidau C.J., Martí D.A. & Giménez M.D. 2003. Two exceptional South American models for the study of chromosomal evolution: the tucura Dichroplus pratensis and the tucotucos of the genus Ctenomys // Historia Natural (Segunda Serie). Vol.2. No.8. P.53-72.
- Bradley R.D. & Baker R.J. 2001. A test of the genetic species concept: cytochrome b sequences and mammals // Journal of Mammalogy. Vol.82. No.4. P.960-973.
- Bulatova N.Sh. & Lavrenchenko L.A. 2005. Possible karyological affinities of small mammals from north of the Ethiopian Plateau // Huber B.A., Sinclair B.J. & Lampe K-H. (eds.). African Biodiversity: Molecules, Organisms, Ecosystems. New York: Springer Verlag. P.315-319.
- Calendini F. & Martin J.F. 2005. PAUPUP version 1.0.3.1: a free graphical frontend for paup* DOS software. Available at: http://www.agromontpellier.fr/sppe/Recherche/JFM/PaupUp
- Fink S., Excoffier L. & Heckel G. 2004. Mitochondrial gene diversity in the common vole Microtus arvalis shaped by historical divergence and local adaptations // Molecular Ecology. Vol.13. P.3501-3514.
- Ford C.E. & Hamerton J.L. 1956. A colchicine hypotonic citrate, squash sequence for mammalian chromosomes // Stain Technology. Vol.31. P.247-251.
- Geurgas S.R. & Rodrigues M.T. 2010. The hidden diversity of Coleodactylus amazonicus (Sphaerodactylinae, Gekkota) revealed by molecular data // Molecular Phylogenetics and Evolution. Vol.54. P.583-593.
- Hasegawa M., Kishino H. & Yano T. 1985. Dating of human-ape splitting by a molecular clock of mitochondrial DNA // Journal of Molecular Evolution. Vol.22. P.160-174.
- Irwin D.E. 2002. Phylogeographic breaks without geographic barriers to gene flow // Evolution. Vol.56. P.2383-2394.
- Irwin D.M., Kocher T.D. & Wilson A.C. 1991. Evolution of the cytochrome b gene of mammals // Journal of Molecular Evolution. Vol.32. P.128-144.
- Jaarola M., Martinkova N., Gündüz I., Brunhoff C., Zima J., Nadachowski A., Amori G., Bulatova N.S., Chondropoulos B., Fraguedakis-Tsolis S., González-Esteban J., José López-Fuster M., Kandaurov A.S., Kefelioğlu H., da Luz Mathias M., Villate I. & Searle J.B. 2004. Molecular phylogeny of the speciose vole genus Microtus (Arvicolinae, Rodentia) inferred from mitochondrial DNA sequences // Molecular Phylogenetics and Evolution. Vol. 33. P.647-663.
- Jansa S.A., Goodman S.M. & Tucker P.K. 1999. Molecular phylogeny and biogeography of the native rodents of Madagascar (Muridae: Nesomyinae): a test of the single-origin hypothesis // Cladistics. Vol.15. P.253-270.
- Jarvis J.U.M. 2013. Genus Tachyoryctes Root-rats // Happold D.C.D. (ed.). Mammals of Africa. Vol.3. London: Bloomsbury Publishing. P.148-149.
- Kumar S., Tamura K. & Nei M. 2004. MEGA 3: Integrated software for molecular evolutionary genetics analysis and sequence alignment // Briefings in Bioinformatics. Vol.5. P.150-163.
- Kuo C.-H. & Avise J.C. 2005. Phylogeographic breaks in low-dispersal species: the emergence of concordance across gene trees // Genetica. Vol.124. P.179-186.
- Lacey E.A. 2000. Spatial and social systems of subterranean rodents // Lacey E.A., Patton J.L. & Cameron G.N. (eds.). Life Underground: The Biology of Subterranean Rodents. Chicago and London: University of Chicago Press. P.257-293.
- López-Antoñanzas R. & Wesselman H.B. 2013. Tachyoryctes makooka (Tachyoryctini, Spalacidae, Rodentia) and its bearing on the phylogeny of the Tachyoryctini // Palaeontology. Vol.56. P.157-166.
- Mathew C.G. 1984. The isolation of high-molecular-weight eukaryotic DNA // Walker J.M. (ed.). Methods in Molecular Biology. New York: Humana. P.31-34.
- Matthey R. 1967. Note sur la cytogénétique de quelques Muridés africains // Mammalia. Vol.31. P.281-287.
- Musser G.G. & Carleton M.D. 2005. Superfamily Muroidea // Wilson D.E. & Reeder D.M. (eds.). Mammal Species of the World. A Taxonomic and Geographic Reference. Third Edition. Vol.2. Baltimore: Johns Hopkins University Press. P.894-1531.
- Posada D. & Crandall K.A. 1998. Modeltest: testing the model of DNA substitution // Bioinformatics. Vol.14. P.817-818.
- Reig O.A., Busch C., Ortells M.O. & Contreras J.L. 1990. An overview of evolution, systematics, population biology and molecular biology in Ctenomys // Nevo E. & Reig O.A. (eds.). Evolution of Subterranean Mammals at the Organismal and Molecular Levels. New York: Allan Liss. P.71-96.
- Sewnet Mengistu & Afework Bekele. 2003. Geographic variations in the Ethiopian common mole-rat (Tachyoryctes splendens) based on morphometry // Ethiopian Journal of Biological Sciences. Vol.2. No.1. P.73-89.
- Steinberg E.K. & Patton J.L. 2000. Genetic Structure and the Geography of Speciation in Subterranean Rodents: Opportunities and Constraints for Evolutionary Diversification // Lacey E.A., Patton J.L. & Cameron G.N. (eds.). Life Underground: The Biology of Subterranean Rodents. Chicago and London: University of Chicago Press. P.301-331.
- Sumner A.T. 1972. A simple technique for demonstrating centromeric heterochromatin // Experimental Cell Research. Vol.75. P.304-306.
- Swofford D.L. 2000. PAUP*: Phylogenetic analysis using parsimony (*and other methods). Version 4.0b2. Sunderland MA: Sinauer Associates.
- Yalden D.W., Largen M.J. & Kock D. 1976. Catalogue of the mammals of Ethiopia. 2. Insectivora and Rodentia // Monitore Zoologico Italiano (N.S.), Supplemento. Vol.8. No.1. P.1-118.
- Zhou C., Zhou K. & Zhang S. 2004. Molecular authentication of the animal crude drug Sailonggu (bone of Myospalax baileyi) // Biological and Pharmaceutical Bulletin. Vol.27. No.11. P.1850-1858.
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