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Riverine barriers and geographic variation in little ground squirrel Spermophilus pygmaeus (Sciuridae, Rodentia) based on mitochondrial cytochrome b gene sequences
Ermakov O.A., Brandler O.V., Ivanov A.Yu., Ivanova A.D., Kesyan A.A., Khalidov A.Kh., Lotiev K.Yu., Lukonina S.A., Tsapko N.V., Titov S.V.
P. 24-31
Little ground squirrel (Spermophilus pygmaeus) typically inhabit semi-deserts and dry steppes of the European plains and Kazakhstan. Range-wide latitudinal distribution along with major river separation zones makes this species a proper model for testing the riverine barrier hypothesis. For the first time, we have evaluated genetic variation in little ground squirrel populations throughout its range based on the analysis of cytochrome b gene sequences. A high level of genetic diversity (4.9%) among “western” and “eastern” populations of the little ground squirrel has evidenced the Volga River to be an effective biogeographic barrier. A barrier role of the Ural River is expressed to a lesser extent, and the Don River has neither effect on the restriction to gene flow and phylogeographic structure. The genetic diversity data has confirmed the hypothesis on S. pygmaeus speciation in the long-term Ciscaucasia refugium, and the appearance of the mountain ground squirrel (S. p. musicus) in the Middle Pleistocene.

DOI: 10.15298/rusjtheriol.22.1.03

Литература

  • Abramson N.I. 2007. Molecular markers, phylogeography and search for the criteria for delimiting species // Proceedings of the Zoological Institute RAS. Vol.313. Suppl.1. P.185–198. [In Russian]
  • Aleksandrov D.Yu., Ivanova A.D., Titov S.V. & Ermakov O.A. 2019. [Finding a yellow ground squirrel (Spermophilus fulvus) in the “Black lands” of Kalmykia and other cases of ground squirrel introduction] // [“Mammals of Russia: Faunistics and Zoogeographical Issues”]. Rostov-on-Don. April 17–19, 2019. Moscow: KMK Scientific Press. P.8–10 [in Russian].
  • Asgharzadeh A., Kaboli M., Rajabi-Maham H. & Naderi M. 2019. Phylogeny and genetic structure of the yellow ground squirrel, Spermophilus fulvus (Lichtenstein, 1823), in Iran // Mammalian Biology. Vol.98. No.1. P.137–145.
  • Bannikova A.A. 2004. Molecular markers and modern phylogenetics of mammals // Journal of General Biology. Vol.65. No.4. P.278–305 [in Russian, with English summary].
  • Bolikhovskaya N.S., Faustov S.S. & Markova A.K. 2016. Pleistocene climatic stratigraphy and environments of the Terek-Kuma Lowland (NW Caspian sea region) inferred from palynological, paleomagnetic and rodent records of the long Otkaznoye sediment sequence // Quaternary International. Vol.409. P.16–32.
  • Brandler O.V., Biryuk I.Yu., Ermakov O.A., Titov S.V., Surin V.L., Korablev V.P. & Tokarsky V.A. 2015. Interspecies and intraspecific molecular genetic variability and differentiation in speckled ground squirrels Spermophilus suslicus and S. odessanus (Rodentia, Sciuridae, Marmotini) // The Journal of V.N. Karazin Kharkiv National University. Series: Biology. No.24. P.58–67 [in Russian, with English summary].
  • Brudin I.D. 1957. [Migrations of ground squirrels in the dry steppes of the Southern Cis-Urals] // Priroda. No.2. P.111–112 [in Russian].
  • Bystrakova N.V., Ermakov O.A. & Titov S.V. 2005. [Chromosomal itinerary on the Middle Don] // VOGiS Herald. Vol.9. No.1. P.67–69 [in Russian].
  • Cook J.A., Eddingsaas A.A., Loxterman J.L., Ebbert S. & MacDonald S.O. 2010. Insular arctic ground squirrels (Spermophilus parryii) of the North Pacific: indigenous or exotic? // Journal of Mammalogy. Vol.91. No.6. P.1401–1412.
  • Eddingsaas A.A., Jacobsen B.K., Lessa E.P. & Cook J.A. 2004. Evolutionary history of the arctic ground squirrel (Spermophilus parryii) in Nearctic Beringia // Journal of Mammalogy. Vol.85. No.4. P.601–610.
  • Ermakov O.A., Simonov E., Surin V.L., Titov S.V., Brandler O.V., Ivanova N.V. & Borisenko A.V. 2015. Implications of hybridization, NUMTs, and overlooked diversity for DNA barcoding of Eurasian ground squirrels // PLoS ONE. Vol.10. No.1. P.e0117201.
  • Ermakov O.A., Simonov E.P., Surin V.L. & Titov S.V., 2018. Intraspecific polymorphism of the mitochondrial DNA control region and phylogeography of little ground squirrel (Spermophilus pygmaeus, Sciuridae, Rodentia) // Russian Journal of Genetics. Vol.54. No.11. P.1332–1341.
  • Ermakov O.A. & Titov S.V. 2000. Dynamics of Spermophilus major (Rodentia, Sciuridae) range boundaries in the Volga River region// Zoologicheskii Zhurnal. Vol.79. No.4. P.503–509.
  • Ermakov O.A., Titov S.V., Savinetskii A.B., Surin V.L., Zborovsky S.S., Lyapunova E.A., Brandler O.V. & Formozov N.A. 2006. Molecular-genetic and paleoecological arguments in for conspecificity of little (Spermophilus pygmaeus) and Caucasian mountain (Spermophilus musicus) ground squirrels // Zoologicheskii Zhurnal. Vol.85. No.12. P.1474–1483 [in Russian, with English summary].
  • Faerman M., Bar-Gal G.K., Boaretto E., Boeskorov G.G., Dokuchaev N.E., Ermakov O.A., Golenishchev F.N., Gubin S. V., Mintz E., Simonov E., Surin V.L., Titov S. V., Zanina O.G. & Formozov N.A. 2017. DNA analysis of a 30,000-year-old Urocitellus glacialis from northeastern Siberia reveals phylogenetic relationships between ancient and present-day arctic ground squirrels // Scientific Reports. Vol.7. P.e42639.
  • Galbreath K.E., Cook J.A., Eddingsaas A.A. & DeChaine E.G. 2011. Diversity and demography in Beringia: multilocus tests of paleodistribution models reveal the complex history of Arctic ground squirrels // Evolution. Vol.65. No.7. P.1879–1896.
  • Gromov I.M., Bibikov D.I., Kalabuchov N.I. & Meier M.N. 1965. [Ground Squirrels (Marmotinae). Fauna USSR, Mammals. Vol.3. No.2]. Moscow: Nauka. 467 p. [in Russian].
  • Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W. & Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. // Systematic Biology. Vol.59. No.3. P.307–321.
  • Gündüz I., Jaarola M., Tez C., Yeniyurt C., Polly P.D. & Searle J.B. 2007. Multigenic and morphometric differntiation of ground squirrels (Spermophilus, Sciurida, Rodentia) in Turkey, with a description of a new species // Molecular Phylogenetics and Evolution. Vol.43. No.3. P.916–935.
  • Gür H., Perktaş U. & Gür M.K. 2018. Do climate-driven altitudinal range shifts explain the intraspecific diversification of a narrow ranging montane mammal, Taurus ground squirrels? // Mammal Research. Vol.63. No.2. P.197–211.
  • Hall T.A. 1999. BioEdit: A user friendly biological sequence alignment editor and analysis program for Windows 95/98/NT // Nucleic Acids Symposium Series. Vol.41. P.95–98.
  • Harrison R.G., Bogdanowicz S.M., Hoffmann R.S., Yensen E. & Sherman P.W. 2003. Phylogeny end evolutionary history of ground squirrels (Rodentia: Marmotinae) // Journal of Mammalian Evolution. Vol.10. No.3. P.249–276.
  • Hebert P.D., Cywinska A., Ball S.L. & DeWaard J.R. 2003. Biological identifications through DNA barcodes // Proceedings of the Royal Society of London. Series B: Biological Sciences. Vol.270. No.1512. P.313–321.
  • Hoang D.T., Chernomor O., von Haeseler A., Minh B.Q. & Vinh L.S. 2018. UFBoot2: Improving the ultrafast bootstrap approximation // Molecular Biology and Evolution. Vol.35. No.2. P.518–522.
  • Kalabukhov N.I. 1978. [Life of a Zoologist (Half century of study of mammals and other animals)]. Moscow: Izdatel
  • Kalabukhov N.I. & Raevskij V.V. 1935. [Study of migration of susliks in steppe territories of the Northern Caucasus with banding method] // Voprosy Ekologii i Biogeotsenologii. No.2. P.170–195 [in Russian].
  • Kalyaanamoorthy S., Minh B.Q., Wong T.K., von Haeseler A. & Jermiin L.S. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates // Nature Methods. Vol.14. No.6. P.587–589.
  • Kryštufek B., Bryja J. & Bužan E. 2009. Mitochondrial phylogeography of the European ground squirrel, Spermophilus citellus, yields evidence on refugia for steppic taxa in the southern Balkans // Heredity. Vol.103. P.129–135.
  • Kumar S., Stecher G. & Tamura K. 2016. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 // Molecular Biology and Evolution. Vol.33. P.1870–1874.
  • Leigh J.W. & Bryant D. 2015. PopART: full-feature software for haplotype network construction // Methods of Ecology and Evolution. Vol.6. P.1110–1116.
  • Librado P. & Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data // Bioinformatics. Vol.25. P.1451–1452.
  • Matrosova V.A., Ivanova A.D., Volodina E.V., Volodin I.A., Alexandrov D.Y., Sibiryakova O.V. & Ermakov O.A. 2019. Phylogenetic relationship and variation of alarm call traits of populations of red-cheeked ground squirrels (Spermophilus erythrogenys sensu lato) suggest taxonomic delineation // Integrative Zoology. Vol.14. No.4. P.341–353.
  • Matrosova V.A., Savinetskaya L.E., Shekarova O.N., Pivanova S.V., Rusin M.Y., Volodin I.A., Volodina E.V. & Tchabovsky A.V. 2014. Within- and between-population polymorphism of the mtDNA control region of the speckled ground squirrel (Spermophilus suslicus) // Doklady Biological Sciences. Vol.455. No.1. P.143–148.
  • McLean B.S., Nyamsuren B., Tchabovsky A. & Cook J.A. 2018. Impacts of late Quaternary environmental change on the long-tailed ground squirrel (Urocitellus undulatus) in Mongolia // Zoological Research. Vol.39. No.5. P.364–372.
  • Minh B.Q., Nguyen M.A.T. & von Haeseler A. 2013. Ultrafast Approximation for Phylogenetic Bootstrap // Molecular Biology and Evolution. Vol.30. No.5. P.1188–1195.
  • Nguyen L.T., Schmidt H.A., von Haeseler A. & Minh B.Q. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies // Molecular Biology and Evolution. Vol.32. No.1. P.268–274.
  • Pavlinov I.Ya. & Khlyap L.A. 2012. Order Rodentia // Pavlinov I.Ya. & Lissovsky A.A. (eds.). The Mammals of Russia: A taxonomic and Geographic Reference (Archive of the Zoological Museum of Moscow State University. Vol.52). Moscow: KMK Scientific Press. P.142–312.
  • Popov N.V. (Ed.) 2016. [Little ground squirrel (Spermophilus pygmaeus Pallas, 1778, Rodentia) in the Caspian and Ciscaucasia]. Saratov: OOO “Amirit”. 236 p.[in Russian].
  • Popova L.V., Maul L.C., Zagorodniuk I.V., Veklych Yu.M., Shydlovskiy P.S., Pogodina N.V., Bondar K.M., Strukova T.V. & Parfitt S.A. 2019. ‘Good fences make good neighbours’: Concepts and records of range dynamics in ground squirrels and geographical barriers in the Pleistocene of the Circum-Black Sea area // Quaternary International. Vol.509. P.103–120.
  • Popova L.V. & Zagorodniuk I.V. 2016. Ranges of ground squirrel species and geographical barriers in the Pleistocene of the Circum-Blak Sea area // Bridging Europe and Asia: Quaternary stratigraphy and Paleolithic human occupation in Armenia and Southern Georgia: program and abstract volume (Erevan, Armenia, 3–10 September 2016). Yerevan, Armenia. P.30 [in Russian].
  • Rall’ Yu.M., Flegontova A.A. & Sheykina M.V. 1933. [Notes on the biology of the little ground squirrel in endemic and plague-free regions of Western Kazakhstan] // Vestnik mikrobiologii, epidemiologii i parazitologii. Vol.12. No.2. P.139–148 [In Russian].
  • Říčanová Š., Koshev Y., Říčan O., Ćosić N., Ćirović D., Sedláček F. & Bryja J. 2013. Multilocus phylogeography of the European ground squirrel: cryptic interglacial refugia of continental climate in Europe // Molecular Ecology. Vol.22. No.16. P.4256–4269.
  • Trifinopoulos J., Nguyen L.T., von Haeseler A. & Minh B.Q. 2016.W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis // Nucleic Acids Research. Vol.44(W1). P.W232–W235.
  • Sambrook J., Fritsch E.F. & Maniatis T. 1989. Molecular Cloning: A Laboratory Manual. Second edition. New York: Cold Spring Harbor Lab. 1659 p.
  • Shilova S.A. 2011. Abundance control and conservation of sousliks in Russia (g. Spermophilus) // Arid Ecosystems. Vol.1. No.4. P.267–272.
  • Simon C., Frati F., Beckenbach A., Crespi B., Liu H. & Flook P. 1994. Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers // Annals of the Entomological Society of America. Vol.87. No.6. P.651–701.
  • Stewart J.R., Lister A.M., Barnes I. & Dalén L. 2010. Refugia revisited: individualistic responses of species in space and time // Proceedings of the Royal Society, B: Biological Sciences. Vol.277. No.1682. P.661–671.
  • Vorontsov N.N., Frisman L.V., Lyapunova E.A., Mezhova O.N., Serdyuk V.A. & Fomicheva I.I. 1980. The effect of isolation on the morphological and genetical divergence of populations // Genetica (Neth.). Vol.52–53. P.339–359.
  • Wallace A.R. 1852. On the monkeys of the Amazon // Proceedings of the Zoological Society of London. Vol.20. P.107–110.

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